Rolf Backofen, Liviu Badea, Pedro Barahona, Mikael Berndtsson, Albert Burger, Gihan Dawelbait, Andreas Doms, François Fages, Anca Hotaran, Vaida Jakoniene, Ludwig Krippahl, Patrick Lambrix, Kenneth McLeod, Werner Nutt, Björn Olsson, Michael Schroeder, Anna Schroiff, Loïc Royer, Sylvain Soliman, He Tan, Doina Tilivea, Sebastian Will:
Björn Olsson, Michael Schroeder (editors):
Requirements and specification of bioinformatics use cases.

Complete Text [
.pdf, 1.4MB]
In: (A2-D3)

This deliverable speci?es use cases based on bioinformatics research carried out by members of A2. The use cases involve the use of rules to reason over ontologies and pathways (Dresden, Edinburgh, Paris, Linköping) and rules to specify work?ows to integrate bioinformatics data (Lisbon, Skövde, Jena, Bucharest). The use cases are designed as a reference point to foster the take up of A2 use cases by I-workpackages. Most notably, many of the use cases specify the need for querying and reactivity with languages like Xcerpt (I4), Erus (I5) and Prova (I5). The use cases range from basic research applications to fully deployed software with an international user base.



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